miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|156679046|gb|AM839402.1|AM839402 CGCCAACGCTTCCATTATGAAATTACCGTTCGCCAACTTGCCGACGCCAACCATTTCTCCGGCATTGAAGATATTATCGA
GCATCAAAAACACTGCCCAGATATTCGTAATGAGTACTTTGTCGCCCGTCTTATTCTTCTTTATGGCAAAGCCAAAATGT
ATGATAATGCCCGTAAGCTGTTCGACGAAATGCCTCAATTAAAATGTCCGCGCTTTGTCTTTTCCTTCAATGCCCTTTTG
GAGGCATGTCTTAAGTCGGAGAGATATGATAAAATTGGCGGGTTATTTCGCGAATTGCCCCAGAAATTGTCAATTGAGCC
TGATCTAGTGTCCTATAACACTGCCATTAAGGCATTATGTAAGGCTGGTTCATTGGATTCTGCCGTGTATTTTATGGATG
AGATGGAAAAGCATGAGATCAAGCCGAATATTGTGACTTGTAATACGTTATTACACGCATTTCAT




Most similar to sp|Q9LK57|PP226_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat_field-containing protein
           At3g13160, mitochondrial OS=Arabidopsis thaliana
           GN=At3g13160 PE=1 SV=1
          Length = 394

 Score =  161 bits (408), Expect = 1e-39
 Identities = 78/147 (53%), Positives = 104/147 (70%)
 Frame = +1

Query: 16  YEITVRQLADANHFSGIEDIIEHQKHCPDIRNEYFVARLILLYGKAKMYDNARKLFDEMP 195
           YE TVR+LA A  F  +E+I+E Q   P++  E FVAR+I LYG+  M++NA+K+FDEMP
Sbjct: 74  YERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMP 133

Query: 196 QLKCPRFVFSFNALLEACLKSERYDKIGGLFRELPQKLSIEPDLVSYNTAIKALCKAGSL 375
           +  C R   SFNALL AC+ S+++D + G+F+ELP KLSIEPD+ SYNT IK LC  GS 
Sbjct: 134 ERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSF 193

Query: 376 DSAVYFMDEMEKHEIKPNIVTCNTLLH 456
             AV  +DE+E   +KP+ +T N LLH
Sbjct: 194 TEAVALIDEIENKGLKPDHITFNILLH 220